Citing FLAIR

If you use or discuss FLAIR, please cite the paper corresponding to the version of FLAIR you used.

For FLAIR v3

Felton, C., Galvez, A., Damle, T. et al. Berger, A. H. & Brooks, A. N. Cancer gene variant identification and functional interpretation using long-read RNA sequencing. In preparation, bioRxiv pre-print available soon.

For FLAIR v2

Tang, A. D., Felton, C., Hrabeta-Robinson, E. et al. Detecting haplotype-specific transcript variation in long reads with FLAIR2. Genome Biol. 25, 173 (2024). DOI:10.1186/s13059-024-03301-y, PMID:38956576

For FLAIR v1

Tang, A. D., Soulette, C. M., van Baren, M. J. et al. Full-length transcript characterization of SF3B1 mutation in chronic lymphocytic leukemia reveals downregulation of retained introns. Nat. Commun. 11, 1438 (2020). DOI:10.1038/s41467-020-15171-6, PMID:32188845